Sim.data: Four Simulation type data based on one tree

In ZRChao/LRTT: Differential Abundance Analysis for Microbiome data incorpating phylogeney

Description

When given one tree, we can simulation count data with this structure, here is one sample case for you to do some test for the function on LRTT.

Usage

data(Sim.data)

Arguments

tree	one tree sturucture with phylo class
BIT	Binominal Tree Distribution
DTM	Dirichlet Multinomial Tree Distribution
LNM	Logistical Normal Multinomial Distribution
ANOCM	Each OTU follow Poission Distribution
dif.otu	Differntial OTU on the leaves
dif.taxa	Differential internal nodes
prob.branch	probability along the branch which corrseponds to the tree edges
group	the subject group lable

Format

The format is: chr "Sim.data"

Author(s)

Chao ZHOU

Examples

data(Sim.data)
tree <- Sim.data$tree
data.bit <- Sim.data$BIT
p <- dim(BIT)[2]

##
taxa <- Taxa.index(p, tree)
taxa.count <- taxa%*%data.bit

ZRChao/LRTT documentation built on May 17, 2019, 6:36 p.m.