ANCOM.Simulation: ANCOM simulation
In ZRChao/LRTT: Differential Abundance Analysis for Microbiome data incorpating phylogeney
Description
Usage
Arguments
Details
Value
Author(s)
References
Examples
Description
Simulation data for ANCOM situation
Usage
1
ANCOM.Sim(p, seed, N, dif)
Arguments
p
OTU numbers
seed
random seeds
N
sample size
dif
the differential OTU you can set
Details
The simulation here is the same from ANCOM papers which set each OTU distributed from Poission distribution.
Value
Return one 2N*p matrix
Author(s)
Chao ZHOU
References
Mandal, Siddhartha, et al. "Analysis of composition of microbiomes: a novel method for studying microbial composition." Microbial ecology in health and disease 26.1 (2015): 27663.
Examples
1
2
ZRChao/LRTT documentation built on May 17, 2019, 6:36 p.m.
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Description Usage Arguments Details Value Author(s) References Examples
Description
Simulation data for ANCOM situation
Usage
1 | ANCOM.Sim(p, seed, N, dif)
|
Arguments
p |
OTU numbers |
seed |
random seeds |
N |
sample size |
dif |
the differential OTU you can set |
Details
The simulation here is the same from ANCOM papers which set each OTU distributed from Poission distribution.
Value
Return one 2N*p matrix
Author(s)
Chao ZHOU
References
Mandal, Siddhartha, et al. "Analysis of composition of microbiomes: a novel method for studying microbial composition." Microbial ecology in health and disease 26.1 (2015): 27663.
Examples
1 2 |
R Package Documentation
Browse R Packages
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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