DTM.Simulation: Dirichlet multinomial tree distribution simulation
In ZRChao/LRTT: Differential Abundance Analysis for Microbiome data incorpating phylogeney
Description
Usage
Arguments
Details
Value
Author(s)
See Also
Description
Function to do simulation with dirichlet multinomial tree distribution based on the tree structure.
Usage
1
DTM.Sim(p, seed = 1, N, tree, pi1, pi2, theta = 0.1)
Arguments
p
OTU numbers
seed
random seeds
N
sample size
tree
tree structure with phylo types
pi1, pi2
the parameters of each branch along the tree which both is one vector with length of the branches
theta
dispersion parameter
Details
Like BIT.Sim()
Value
Return one count matrix of the OTU and internal nodes.
Author(s)
Chao ZHOU
See Also
BIT.Sim
ZRChao/LRTT documentation built on May 17, 2019, 6:36 p.m.
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Description Usage Arguments Details Value Author(s) See Also
Description
Function to do simulation with dirichlet multinomial tree distribution based on the tree structure.
Usage
1 | DTM.Sim(p, seed = 1, N, tree, pi1, pi2, theta = 0.1)
|
Arguments
p |
OTU numbers |
seed |
random seeds |
N |
sample size |
tree |
tree structure with phylo types |
pi1, pi2 |
the parameters of each branch along the tree which both is one vector with length of the branches |
theta |
dispersion parameter |
Details
Like BIT.Sim()
Value
Return one count matrix of the OTU and internal nodes.
Author(s)
Chao ZHOU
See Also
BIT.Sim
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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