Taxa.index: Relationship between leaves and internal nodes
In ZRChao/LRTT: Differential Abundance Analysis for Microbiome data incorpating phylogeney
Usage
Arguments
Details
Value
Author(s)
Examples
Usage
1
Taxa.index(p, tree)
Arguments
p
OTU numbers
tree
tree structure, object of phylo type
Details
This function have the same function with caper::clade.members.list
Value
One matrix with dimension p*s, s is the number of the internal nodes
Author(s)
Chao ZHOU
Examples
1
2
3
4
5
6
7
8
p <- 6
tree <- Tree.Sim(p)
otu.tab <- matrix(1:100, p)
colnames(otu.tab) <- as.character(1:p)
taxa <- taxa.index(p, tree)
##get the count on the internal nodes
taxa.otu <- taxa * otu.tab
ZRChao/LRTT documentation built on May 17, 2019, 6:36 p.m.
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Usage Arguments Details Value Author(s) Examples
Usage
1 | Taxa.index(p, tree)
|
Arguments
p |
OTU numbers |
tree |
tree structure, object of phylo type |
Details
This function have the same function with caper::clade.members.list
Value
One matrix with dimension p*s, s is the number of the internal nodes
Author(s)
Chao ZHOU
Examples
1 2 3 4 5 6 7 8 | p <- 6
tree <- Tree.Sim(p)
otu.tab <- matrix(1:100, p)
colnames(otu.tab) <- as.character(1:p)
taxa <- taxa.index(p, tree)
##get the count on the internal nodes
taxa.otu <- taxa * otu.tab
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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