collapseReplicates: Collapse signal from replicates

In ZarnackGroup/BindingSiteFinder: Binding site defintion based on iCLIP data

Collapse signal from replicates

Description

Collapses all replicates merges all samples from a BSFDataSet object into a single signal stream, only split by minus and plus strand.

Usage

collapseReplicates(object, collapseAll = FALSE)

Arguments

object	a BSFDataSet object
collapseAll	TRUE/FALSE, if all samples should be collapsed (TRUE), or if samples should be kept separate by condition (FALSE)

Value

object of type BSFDataSet with updated signal

See Also

BSFDataSet

Examples

# load data
files <- system.file("extdata", package="BindingSiteFinder")
load(list.files(files, pattern = ".rda$", full.names = TRUE))

bdsNew = collapseReplicates(bds)

ZarnackGroup/BindingSiteFinder documentation built on Nov. 24, 2024, 10:41 a.m.