mergeCrosslinkDiagnosticsPlot: Plot binding site merging diagnostics

In ZarnackGroup/BindingSiteFinder: Binding site defintion based on iCLIP data

Plot binding site merging diagnostics

Description

A diagnostic function that plots the number of regions to merge over the width of these regions for each merging iteration calculated in makeBindingSites. The function makeBindingSites is expected to be executed prior to calling this plot function.

Usage

mergeCrosslinkDiagnosticsPlot(object)

Arguments

object

a BSFDataSet object

Value

a plot of type ggplot

See Also

makeBindingSites

Examples

# load clip data
files <- system.file("extdata", package="BindingSiteFinder")
load(list.files(files, pattern = ".rda$", full.names = TRUE))
bds = makeBindingSites(object = bds, bsSize = 9)
mergeCrosslinkDiagnosticsPlot(bds)

ZarnackGroup/BindingSiteFinder documentation built on April 14, 2025, 1:56 p.m.