makeBsSummaryPlot: Plot binding site filter diagnostics
In ZarnackGroup/BindingSiteFinder: Binding site defintion based on iCLIP data
makeBsSummaryPlot R Documentation
Plot binding site filter diagnostics
Description
A diagnostic function that plots the number of binding sites retained
after each filtering step calculated in makeBindingSites.
The function makeBindingSites is expected to be executed prior
to calling this plot function.
Usage
makeBsSummaryPlot(object)
Arguments
object
a BSFDataSet object
Value
a plot of type ggplot
See Also
makeBindingSites
Examples
# load clip data
files <- system.file("extdata", package="BindingSiteFinder")
load(list.files(files, pattern = ".rda$", full.names = TRUE))
bds = makeBindingSites(object = bds, bsSize = 9)
makeBsSummaryPlot(bds)
ZarnackGroup/BindingSiteFinder documentation built on April 14, 2025, 1:56 p.m.
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| makeBsSummaryPlot | R Documentation |
Plot binding site filter diagnostics
Description
A diagnostic function that plots the number of binding sites retained
after each filtering step calculated in makeBindingSites.
The function makeBindingSites is expected to be executed prior
to calling this plot function.
Usage
makeBsSummaryPlot(object)
Arguments
object |
a |
Value
a plot of type ggplot
See Also
makeBindingSites
Examples
# load clip data
files <- system.file("extdata", package="BindingSiteFinder")
load(list.files(files, pattern = ".rda$", full.names = TRUE))
bds = makeBindingSites(object = bds, bsSize = 9)
makeBsSummaryPlot(bds)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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