Files in abbvie-external/OmicNavigator
Open-Source Software for 'Omic' Data Analysis and Visualization
.Rbuildignore
.github/CODE_OF_CONDUCT.md
.github/ISSUE_TEMPLATE/bug_report.md
.github/ISSUE_TEMPLATE/feature_request.md
.github/workflows/comprehensive.yml
.github/workflows/pin-app.yml
.github/workflows/quick.yml
.github/workflows/release.yml
.gitignore
CONTRIBUTING.md
DESCRIPTION
Deployment.md
DockerDeploy
Dockerfile
LICENSE
LICENSE.md
Makefile
NAMESPACE
NEWS.md
OmicNavigator.Rproj
R/add.R
R/app.R
R/check.R
R/combine.R
R/data.R
R/export.R
R/get.R
R/import.R
R/local.R
R/overlaps.R
R/plots.R
R/print.R
R/sanitize.R
R/summary.R
R/tests.R
R/upset.R
R/utility.R
R/validate.R
R/zzz.R
README.md
cran-comments.md
data/RNAseq123.RData
inst/CITATION
inst/OmicNavigator.gif
inst/extdata/description-fields-reserved.txt
inst/tinytest/testAdd.R
inst/tinytest/testApp.R
inst/tinytest/testBugs.R
inst/tinytest/testCheck.R
inst/tinytest/testCombine.R
inst/tinytest/testExport.R
inst/tinytest/testExtraMetadata.R
inst/tinytest/testGet.R
inst/tinytest/testGetNumeric.R
inst/tinytest/testImport.R
inst/tinytest/testOverlaps.R
inst/tinytest/testPiecemeal.R
inst/tinytest/testPlot.R
inst/tinytest/testPrint.R
inst/tinytest/testSummary.R
inst/tinytest/testUpset.R
inst/tinytest/testUtility.R
inst/tinytest/testValidate.R
inst/tinytest/tinytestSettings.R
man/Mm.c2.Rd
man/OmicNavigator-package.Rd
man/addAnnotations.Rd
man/addAssays.Rd
man/addBarcodes.Rd
man/addEnrichments.Rd
man/addEnrichmentsLinkouts.Rd
man/addFeatures.Rd
man/addMapping.Rd
man/addMetaFeatures.Rd
man/addMetaFeaturesLinkouts.Rd
man/addModels.Rd
man/addOverlaps.Rd
man/addPlots.Rd
man/addReports.Rd
man/addResults.Rd
man/addResultsLinkouts.Rd
man/addSamples.Rd
man/addTests.Rd
man/basal.vs.lp.Rd
man/basal.vs.ml.Rd
man/cam.BasalvsLP.Rd
man/cam.BasalvsML.Rd
man/combineStudies.Rd
man/createStudy.Rd
man/exportStudy.Rd
man/figures/omicnavigator-dark-text.png
man/getAnnotations.Rd
man/getAssays.Rd
man/getBarcodeData.Rd
man/getBarcodes.Rd
man/getEnrichments.Rd
man/getEnrichmentsIntersection.Rd
man/getEnrichmentsLinkouts.Rd
man/getEnrichmentsNetwork.Rd
man/getEnrichmentsTable.Rd
man/getEnrichmentsUpset.Rd
man/getFavicons.Rd
man/getFeatures.Rd
man/getInstalledStudies.Rd
man/getLinkFeatures.Rd
man/getMapping.Rd
man/getMetaFeatures.Rd
man/getMetaFeaturesLinkouts.Rd
man/getMetaFeaturesTable.Rd
man/getModels.Rd
man/getNodeFeatures.Rd
man/getOverlaps.Rd
man/getPackageVersion.Rd
man/getPlots.Rd
man/getPlottingData.Rd
man/getReportLink.Rd
man/getReports.Rd
man/getResults.Rd
man/getResultsIntersection.Rd
man/getResultsLinkouts.Rd
man/getResultsTable.Rd
man/getResultsUpset.Rd
man/getSamples.Rd
man/getTests.Rd
man/getUpsetCols.Rd
man/group.Rd
man/importStudy.Rd
man/installApp.Rd
man/installStudy.Rd
man/lane.Rd
man/lcpm.Rd
man/listStudies.Rd
man/plotStudy.Rd
man/removeStudy.Rd
man/samplenames.Rd
man/shared-add.Rd
man/shared-data.Rd
man/shared-get.Rd
man/shared-upset.Rd
man/startApp.Rd
man/summary.onStudy.Rd
man/validateStudy.Rd
scripts/RNAseq123.R
scripts/bump-app-version.R
scripts/bundleApp.sh
scripts/diagrams/enrichments-1.gv
scripts/diagrams/enrichments-2.gv
scripts/diagrams/enrichments-3.gv
scripts/diagrams/enrichments-rna.gv
scripts/diagrams/models.gv
scripts/diagrams/results-1.gv
scripts/diagrams/results-2.gv
scripts/diagrams/results-3.gv
scripts/diagrams/results-rna.gv
scripts/install-dependencies-r2u.sh
scripts/install-test-study.R
scripts/release.sh
scripts/setup-r2u.sh
tests/tinytest.R
vignettes/.gitignore
vignettes/OmicNavigatorAPI.Rnw
vignettes/OmicNavigatorUsersGuide.Rnw
vignettes/images/enrichments-1.pdf
vignettes/images/enrichments-2.pdf
vignettes/images/enrichments-3.pdf
vignettes/images/enrichments-rna.pdf
vignettes/images/models.pdf
vignettes/images/results-1.pdf
vignettes/images/results-2.pdf
vignettes/images/results-3.pdf
vignettes/images/results-rna.pdf
