API for abshah/RADseqR

Global functions
add_ReadGroups_with_picard Man page Source code
apply_filter_to_stacks_haplotypes_for_whitelist Source code
call_SNPs_with_GATK Man page Source code
call_SNPs_with_GATK_haplotyper Source code
convert_table_to_SNP_data Source code
count_genotypes_in_table_data Source code
create_RADseqR_project Man page Source code
create_sequence_dict_with_picard Man page Source code
execute_denovomap_from_stacks Man page Source code
execute_denovomap_from_stacks_for_populations Source code
execute_sort_read_pairs_from_stacks Man page Source code
execute_velvet_script_from_stacks Man page Source code
fastq_to_fasta Man page Source code
fastx_artifacts_filter Man page Source code
fastx_clipper Man page Source code
fastx_quality_stats Man page Source code
fastx_renamer Man page Source code
fastx_reverse_complement Man page Source code
fastx_trimmer Man page Source code
get_whitelist_from_haplotype_list Man page Source code
hello Man page
is_the_application_installed Man page Source code
make_psuedoparent Man page Source code
map_with_bowtie2 Man page Source code
map_with_bwa_and_remove_PCR_duplicates Man page Source code
map_with_bwa_mem Man page Source code
merge_SAM_files Source code
parse_DM_log_file Source code
parse_PR_log_file Source code
process_ddradtags_from_stacks Man page Source code
process_radtags_from_stacks Man page Source code
read_VCF_table_and_apply_PNAS_2014_SNP_filters Source code
remove_PCR_duplicates Source code
abshah/RADseqR documentation built on June 3, 2017, 12:47 p.m.