Man pages for abshah/RADseqR

add_ReadGroups_with_picardAdd Read Groups to SAM files using Picard tools
call_SNPs_with_GATKcall SNPs with GATK
create_RADseqR_projectcreate RADseqR project
create_sequence_dict_with_picardCreate Fasta Dictionary
execute_denovomap_from_stacksExecute DeNovomap pipeline from Stacks
execute_sort_read_pairs_from_stacksExecute sort read pairs from stacks
execute_velvet_script_from_stacksExecute Velvet from Stacks
fastq_to_fastafastq to fasta
fastx_artifacts_filterFASTX Artifacts Filter
fastx_clipperfastx clipper
fastx_quality_statsfastx quality report
fastx_renamerfastx renamer
fastx_reverse_complementFASTX Reverse Complement
fastx_trimmerFASTX Trimmer
get_whitelist_from_haplotype_listGet whitelist from haplotype list
helloHello, World!
is_the_application_installedIs this application installed on this system ?
make_psuedoparentmake psuedo-parent files
map_with_bowtie2Map reads with Bowtie2
map_with_bwa_and_remove_PCR_duplicatesRemove PCR duplicates using bwa and Picard
map_with_bwa_memMap reads with BWA
process_ddradtags_from_stacksProcess radtags with Stacks
process_radtags_from_stacksProcess radtags with Stacks
abshah/RADseqR documentation built on June 3, 2017, 12:47 p.m.