Map reads with BWA
1 | map_with_bwa_mem(ref_fasta, fastq_1, fastq_2)
|
ref_fasta |
reference genome or contigs |
fastq_1 |
left reads or 1 reads of sample (pair-end reads) to map |
fastq_2 |
right reads or 2 reads of sample (pair-end reads) to map |
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