map_with_bwa_mem: Map reads with BWA

Description Usage Arguments

Description

Map reads with BWA

Usage

1
map_with_bwa_mem(ref_fasta, fastq_1, fastq_2)

Arguments

ref_fasta

reference genome or contigs

fastq_1

left reads or 1 reads of sample (pair-end reads) to map

fastq_2

right reads or 2 reads of sample (pair-end reads) to map


abshah/RADseqR documentation built on May 10, 2019, 5:08 a.m.