Man pages for abshah/RADseqR
| add_ReadGroups_with_picard | Add Read Groups to SAM files using Picard tools |
| call_SNPs_with_GATK | call SNPs with GATK |
| create_RADseqR_project | create RADseqR project |
| create_sequence_dict_with_picard | Create Fasta Dictionary |
| execute_denovomap_from_stacks | Execute DeNovomap pipeline from Stacks |
| execute_sort_read_pairs_from_stacks | Execute sort read pairs from stacks |
| execute_velvet_script_from_stacks | Execute Velvet from Stacks |
| fastq_to_fasta | fastq to fasta |
| fastx_artifacts_filter | FASTX Artifacts Filter |
| fastx_clipper | fastx clipper |
| fastx_quality_stats | fastx quality report |
| fastx_renamer | fastx renamer |
| fastx_reverse_complement | FASTX Reverse Complement |
| fastx_trimmer | FASTX Trimmer |
| get_whitelist_from_haplotype_list | Get whitelist from haplotype list |
| hello | Hello, World! |
| is_the_application_installed | Is this application installed on this system ? |
| make_psuedoparent | make psuedo-parent files |
| map_with_bowtie2 | Map reads with Bowtie2 |
| map_with_bwa_and_remove_PCR_duplicates | Remove PCR duplicates using bwa and Picard |
| map_with_bwa_mem | Map reads with BWA |
| process_ddradtags_from_stacks | Process radtags with Stacks |
| process_radtags_from_stacks | Process radtags with Stacks |
