Files in acorg/ablandscapes
Making Antibody landscapes Using R
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.gitignore
DESCRIPTION
LICENSE.md
NAMESPACE
R/RcppExports.R
R/ablandscape_confidence.R
R/ablandscape_control.R
R/ablandscape_fit.R
R/ablandscape_par.R
R/ablandscape_predict.R
R/ablandscapes.R
R/build_ablandscape.R
R/cv_testing.R
R/data.R
R/fit_lndscp2point.R
R/mean_titer.R
R/plot_lndscp.R
R/plot_lndscp_contour.R
R/plot_lndscp_map.R
R/plot_lndscp_setup.R
R/plot_lndscp_surface.R
R/plot_lndscp_titers.R
R/titer_conversion.R
R/titer_lims.R
R/utils_build.R
README.md
ablandscapes.Rproj
data/h3basemap2015.path.rda
data/h3basemap2015.rda
data/h3basemap2015_agClusters.rda
data/h3coords2015.rda
data/hanam.info.rda
data/hanam.swabs.rda
data/hanam.titers.rda
data/vaccine1997.info.rda
data/vaccine1997.titers.post.rda
data/vaccine1997.titers.pre.rda
data/vaccine1998.info.rda
data/vaccine1998.titers.post.rda
data/vaccine1998.titers.pre.rda
data/vaccine2009.info.rda
data/vaccine2009.titers.post.rda
data/vaccine2009.titers.pre.rda
data/vaccine2010.info.rda
data/vaccine2010.titers.post.rda
data/vaccine2010.titers.pre.rda
man/ablandscape.control.Rd
man/ablandscape.delta.fit.Rd
man/ablandscape.fit.Rd
man/ablandscape.par.Rd
man/build_lndscp.Rd
man/calc_mean_titer_negll.Rd
man/calc_titer_diffs.Rd
man/calc_titer_lims.Rd
man/fit_ci2coords.Rd
man/fit_height2point.Rd
man/fit_lndscp2coords.Rd
man/fit_lndscp2point.Rd
man/h3coords2015.Rd
man/lndscp.cv.test.Rd
man/lndscp3d_map.Rd
man/lndscp3d_surface.Rd
man/lndscp3d_titers.Rd
man/lndscp_checkChull.Rd
man/lndscp_contour_ggplot.Rd
man/lndscp_r3jsplot.Rd
man/logfoldchange.mean.Rd
man/logtiter.mean.Rd
man/mean_fromlims.Rd
man/model_lndscp_height.Rd
man/negll_titer_lm.Rd
man/plot.cv.summary.Rd
man/predict.ablandscape.fit.Rd
man/summary.lndscp.cv.Rd
man/tricubic.weights.Rd
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/cone_fit.cpp
src/titer_likelihood.cpp
src/titer_likelihood.h
src/weighted_lm.cpp
