API for ada-w-yan/deltaomicron1
Fit model to Delta and Omicron growth curves with and without Camostat
| Global functions | |
|---|---|
| CREATE_POSTERIOR_FUNC_fn_camostat | Man page Source code |
| CREATE_POSTERIOR_FUNC_fn_camostat_amphoB | Man page Source code |
| Map_vapply | Man page Source code |
| add_y_scale | Man page Source code |
| apply_named_args | Man page Source code |
| arrange_grid | Man page Source code |
| calc_LL_log10normal_threshold | Man page Source code |
| calc_LL_log10normal_threshold_wrapper | Source code |
| calc_R_0_camostat | Source code |
| calc_beta_pathway | Source code |
| calc_gen_time_camostat | Source code |
| calc_moment_from_pmf | Man page Source code |
| calc_r_camostat | Source code |
| calc_r_camostat_stages | Man page Source code |
| calc_r_camostat_stages_different_eclipse | Man page Source code |
| calc_sol_add_stages | Man page |
| calc_sol_camostat_preincub | Source code |
| calc_sol_chain | Man page Source code |
| calc_sol_chain_camostat_amphoB | Man page |
| compile_model | Man page Source code |
| cont_MCMC | Man page Source code Source code |
| darken | Man page Source code |
| dl10norm | Man page Source code |
| expect_equal_tol | Source code |
| extract_max_LL_iters | Man page Source code |
| find_func_file | Man page Source code |
| find_sign_change_ind | Man page Source code |
| gen_default_mcmcPars | Man page Source code |
| gen_mcmcPars | Man page Source code |
| gen_mcmcPars_long | Man page Source code |
| gen_mcmcPars_short | Man page Source code |
| gen_mcmcPars_timing | Man page Source code |
| gen_nice_breaks | Man page Source code |
| gen_prediction_ci | Man page Source code |
| gen_summary_statistics_fn_camostat | Man page Source code |
| gen_time_list | Man page Source code |
| generate_random_start | Man page Source code |
| get_MCMC_chain | Man page Source code |
| get_and_save_max_LL_params | Man page |
| get_func_names | Man page Source code |
| get_max_LL_params | Man page Source code |
| get_mod_info | Source code |
| get_package_dir | Man page Source code |
| get_pathways | Source code |
| get_strain_names | Man page Source code |
| get_vars_from_list_with_check | Man page Source code |
| gg_color_hue | Man page Source code Source code |
| ggsave_wch | Man page Source code |
| ggsave_wrapper | Man page Source code |
| gm_mean | Man page Source code |
| grepl_all | Source code |
| grepl_any | Source code |
| interpolate_vector | Man page Source code |
| is.error | Source code |
| is_integer_like | Man page Source code |
| lapply_w_name | Man page Source code |
| lighten | Man page Source code |
| list2here | Man page Source code |
| list_vars_from_environment | Man page Source code |
| load_into_list | Man page Source code |
| load_packages | Man page Source code Source code |
| make_clean_dir | Source code |
| make_factor | Man page Source code |
| make_filename | Man page Source code |
| make_filename_from_number | Man page Source code |
| make_p_value_str | Man page Source code |
| make_prediction_time | Source code |
| make_seed | Man page Source code |
| make_solving_time | Man page Source code |
| match_data_prediction_times | Source code |
| mkdir_from_filename | Man page Source code |
| name_predictions | Source code |
| no_warn | Man page Source code |
| normalise | Man page Source code |
| order_cols | Source code |
| pairwise_stats_tests | Man page Source code |
| pl10norm | Man page Source code |
| plot_LL | Man page Source code |
| plot_bivariate_scatter | Man page Source code |
| plot_bivariate_scatter_all | Man page Source code |
| plot_diagnostics | Man page Source code |
| plot_dynamics_camostat | Man page Source code |
| plot_dynamics_inner | Man page |
| plot_histogram_general | Man page Source code |
| plot_marginal_by_chain | Man page |
| plot_marginal_histogram | Man page Source code |
| plot_marginal_histogram_all | Man page Source code |
| plot_posterior | Source code |
| plot_postprocessed_chain | Source code |
| plot_trace | Man page Source code |
| plot_trace_all | Man page Source code |
| postprocess_chain | Man page Source code |
| postprocess_for_plotting | Man page Source code |
| print_prctiles | Man page Source code |
| read_Calu3_data | Man page Source code |
| read_PCR | Man page Source code |
| read_camostat_data | Man page |
| read_code_unspace | Source code |
| read_csv_or_rds | Man page Source code |
| read_plaque | Man page Source code |
| read_plaque_peacock | Man page Source code |
| read_prism_file | Man page Source code |
| read_summary_stats | Man page Source code |
| rl10norm | Man page Source code |
| run_all | Man page Source code |
| run_exp_camostat | Man page Source code |
| run_exp_camostat_amphoB | Man page Source code |
| run_exp_camostat_fit_subset_pars | Man page Source code |
| run_exp_camostat_shared_pars | Man page Source code |
| sample_from_prior | Man page Source code |
| save_all | Man page Source code |
| set_default_seeds | Man page Source code |
| setup_and_run_MCMC | Man page Source code |
| solve_ODE_error_handling | Man page Source code |
| solve_from_posterior_preincub | Man page |
| source_files | Man page Source code Source code |
| specify_camostat_amphoB_parameters_fn | Source code |
| specify_camostat_parameters_fn | Man page Source code |
| specify_camostat_parameters_fn_fit_subset_pars | Man page Source code |
| specify_camostat_parameters_fn_share_subset_pars | Source code |
| strReverse | Source code |
| sum_stages | Man page Source code |
| suppress_final_line_warning | Source code |
| thin_chain | Man page Source code |
| thin_csv_or_rds | Man page Source code |
| transform_pars_wrapper_camostat | Man page Source code |
| transform_pars_wrapper_tmprss2_only | Man page |
| try_fread | Man page Source code |
| try_read | Man page Source code |
| vcapply | Man page Source code |
| viapply | Man page Source code |
| vlapply | Man page Source code |
| vnapply | Man page Source code |
