Files in ada-w-yan/deltaomicron1

Fit model to Delta and Omicron growth curves with and without Camostat

R/camostat_model_calc_sol.R R/camostat_model_other.R R/camostat_model_posterior.R R/camostat_model_run.R R/camostat_model_specify_pars.R R/camostat_model_sum_stats.R R/general_functions.R R/mcmc_helpers.R R/mcmc_plotting.R R/mcmc_postprocessing.R R/mcmc_run_all.R R/mcmc_setup.R R/model_common_fns.R R/model_likelihood_helpers.R R/plotting.R R/read_data.R README.md main.Rmd man/CREATE_POSTERIOR_FUNC_fn_camostat.Rd man/CREATE_POSTERIOR_FUNC_fn_camostat_amphoB.Rd man/Map_vapply.Rd man/add_y_scale.Rd man/apply_named_args.Rd man/arrange_grid.Rd man/calc_LL_log10normal_threshold.Rd man/calc_moment_from_pmf.Rd man/calc_r_camostat_stages.Rd man/calc_r_camostat_stages_different_eclipse.Rd man/calc_sol_add_stages.Rd man/calc_sol_chain.Rd man/calc_sol_chain_camostat_amphoB.Rd man/compile_model.Rd man/cont_MCMC.Rd man/darken.Rd man/dl10norm.Rd man/extract_max_LL_iters.Rd man/find_func_file.Rd man/find_sign_change_ind.Rd man/gen_default_mcmcPars.Rd man/gen_mcmcPars.Rd man/gen_mcmcPars_long.Rd man/gen_mcmcPars_short.Rd man/gen_mcmcPars_timing.Rd man/gen_nice_breaks.Rd man/gen_prediction_ci.Rd man/gen_summary_statistics_fn_camostat.Rd man/gen_time_list.Rd man/generate_random_start.Rd man/get_MCMC_chain.Rd man/get_and_save_max_LL_params.Rd man/get_func_names.Rd man/get_max_LL_params.Rd man/get_package_dir.Rd man/get_strain_names.Rd man/get_vars_from_list_with_check.Rd man/gg_color_hue.Rd man/ggsave_wch.Rd man/ggsave_wrapper.Rd man/gm_mean.Rd man/interpolate_vector.Rd man/is_integer_like.Rd man/lapply_w_name.Rd man/lighten.Rd man/list2here.Rd man/list_vars_from_environment.Rd man/load_into_list.Rd man/load_packages.Rd man/make_factor.Rd man/make_filename.Rd man/make_filename_from_number.Rd man/make_p_value_str.Rd man/make_seed.Rd man/make_solving_time.Rd man/mkdir_from_filename.Rd man/no_warn.Rd man/normalise.Rd man/pairwise_stats_tests.Rd man/pl10norm.Rd man/plot_LL.Rd man/plot_bivariate_scatter.Rd man/plot_bivariate_scatter_all.Rd man/plot_diagnostics.Rd man/plot_dynamics_camostat.Rd man/plot_dynamics_inner.Rd man/plot_histogram_general.Rd man/plot_marginal_by_chain.Rd man/plot_marginal_histogram.Rd man/plot_marginal_histogram_all.Rd man/plot_trace.Rd man/plot_trace_all.Rd man/postprocess_chain.Rd man/postprocess_for_plotting.Rd man/print_prctiles.Rd man/read_Calu3_data.Rd man/read_PCR.Rd man/read_camostat_data.Rd man/read_csv_or_rds.Rd man/read_plaque.Rd man/read_plaque_peacock.Rd man/read_prism_file.Rd man/read_summary_stats.Rd man/rl10norm.Rd man/run_all.Rd man/run_exp_camostat.Rd man/run_exp_camostat_amphoB.Rd man/run_exp_camostat_fit_subset_pars.Rd man/run_exp_camostat_shared_pars.Rd man/sample_from_prior.Rd man/save_all.Rd man/set_default_seeds.Rd man/setup_and_run_MCMC.Rd man/solve_ODE_error_handling.Rd man/solve_from_posterior_preincub.Rd man/source_files.Rd man/specify_camostat_parameters_fn.Rd man/specify_camostat_parameters_fn_fit_subset_pars.Rd man/sum_stages.Rd man/thin_chain.Rd man/thin_csv_or_rds.Rd man/transform_pars_wrapper_camostat.Rd man/transform_pars_wrapper_tmprss2_only.Rd man/try_fread.Rd man/try_read.Rd man/vcapply.Rd man/viapply.Rd man/vlapply.Rd man/vnapply.Rd model_odin/model_different_eclipse_stages.R model_odin/model_different_eclipse_stages_dual.R model_odin/model_n_cell_types.R model_odin/model_n_cell_types_stages.R model_odin/model_teiv.R model_odin/model_teiv_stages.R