adnaniazi/tailfindr: Poly(A) Tail Length Estimator for Oxford Nanopore RNA and DNA Reads
An alignment-free tool to estimate poly(A)/poly(T) tail lengths in 1D Oxford nanopore sequencing reads. It can handle reads from basecalled with Albacore or Guppy using the standard or the newest 'flipflop' model. It can work with single as well as multi-fast5 files. Currently, tailfindr can estimate poly(A) tail length in 1D RNA nanopore reads, and both poly(A) and poly(T) lengths in 1D DNA nanopore reads.
Getting started
Browse package contents
Package details |
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| Maintainer | Adnan Niazi <adnaniazi@gmail.com> |
| License | GPL-3 + file LICENSE |
| Version | 1.4 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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