annotate_tails: Assign transcript IDs to poly(A) tails

In adnaniazi/tailfindr: Poly(A) Tail Length Estimator for Oxford Nanopore RNA and DNA Reads

Assign transcript IDs to poly(A) tails

Description

This function assigns transcript IDs to the poly(A) tails estimated by tailfindr's find_tails() function. It merges information alignment SAM file and tailfindr's CSV output. The output is written to a file, and also returned as dataframe.

Usage

annotate_tails(sam_file, tails_csv_file, output_file)

Arguments

sam_file	The path of alignment SAM file
tails_csv_file	The path of the CSV file produced by find_tails
output_file	The path of the output file

Value

A dataframe

adnaniazi/tailfindr documentation built on March 23, 2024, 7:07 a.m.