Man pages for adnaniazi/tailfindr
Poly(A) Tail Length Estimator for Oxford Nanopore RNA and DNA Reads
| annotate_tails | Assign transcript IDs to poly(A) tails |
| explore_basecaller_and_fast5type | Explore a fast5 file to find parameters of the experiment |
| extract_read_data | Extract the read data from a fast5 file |
| extract_sequence_between_boundaries | Extract sequence between two samples boundaries |
| find_dna_tail_per_read | Find poly(A)/poly(T) tail in a single DNA read |
| find_dna_tailtype | Finds if a DNA read is poly(A) read or poly(T) read |
| find_rna_polya_crude_start_end | Find the crude start and end of polyA tail in RNA read |
| find_rna_polya_precise_start_end | Finds the precise RNA tail and start |
| find_rna_polya_tail_per_read | Find Poly(A) tail in a single RNA read. |
| find_sample_index_for_fastq_base | Finds raw data sample index corresponding to a base. |
| find_tails | Estimates poly(A)/(T) tail lengths in Oxford Nanopore RNA and... |
| get_custom_fp_ep | Get custom front and end primers from optional parameters... |
| get_dna_datatype | Parse optional params to get the type of DNA |
| left_to_right_sliding_window_dna | Sliding window from left to right |
| left_to_right_sliding_window_rna | Sliding window from left to right |
| read_sam | Read SAM file Author credits: Grischa Toedt & VladaMilch |
| rectify | Convert negative values in the signal to corresponding... |
| right_to_left_sliding_window_dna | Sliding window from right to left. |
| right_to_left_sliding_window_rna | Sliding window from right to left. |
| smoothen_rle_intersections_rna | Smoothen RLE intersections for RNA |
| truncate_spikes | Truncate spikes |
| z_normalize | z-normalize |
