Files in adnaniazi/tailfindr
Poly(A) Tail Length Estimator for Oxford Nanopore RNA and DNA Reads
.Rbuildignore
.dockerignore
.gitignore
DESCRIPTION
Dockerfile
LICENSE
NAMESPACE
R/annotate-tails.R
R/explore-basecaller-and-fast5type.R
R/extract-read-data.R
R/extract-sequence-between-boundaries.R
R/find-dna-tail-per-read.R
R/find-dna-tailtype.R
R/find-rna-polya-crude-start-end.R
R/find-rna-polya-precise-start-end.R
R/find-rna-polya-tail-per-read.R
R/find-tails.R
R/find_sample_index_for_fastq_base.R
R/get-custom-fp-ep.R
R/get-dna-datatype.R
R/read-sam.R
R/rectify.R
R/sliding-windows-dna.R
R/sliding-windows-rna.R
R/smoothen-rle-intersections-rna.R
R/truncate-spikes.R
R/z-normalize.R
R/zzz.R
README.Rmd
README.md
inst/CITATION
inst/NEWS
inst/extdata/cdna/basecalled_with_standard_model/polya_reads/1.fast5
inst/extdata/cdna/basecalled_with_standard_model/polya_reads/2.fast5
inst/extdata/cdna/basecalled_with_standard_model/polya_reads/3.fast5
inst/extdata/cdna/basecalled_with_standard_model/polya_reads/4.fast5
inst/extdata/cdna/basecalled_with_standard_model/polya_reads/5.fast5
inst/extdata/cdna/basecalled_with_standard_model/polyt_reads/1.fast5
inst/extdata/cdna/basecalled_with_standard_model/polyt_reads/2.fast5
inst/extdata/cdna/basecalled_with_standard_model/polyt_reads/3.fast5
inst/extdata/cdna/basecalled_with_standard_model/polyt_reads/4.fast5
inst/extdata/cdna/basecalled_with_standard_model/polyt_reads/5.fast5
inst/extdata/rna/1.fast5
inst/extdata/rna/2.fast5
inst/extdata/rna/3.fast5
inst/extdata/rna/4.fast5
inst/extdata/rna/5.fast5
inst/extdata/rna_basecall_1D_001/0.fast5
inst/extdata/rna_basecall_1D_001/1.fast5
inst/extdata/rna_basecall_1D_001/2.fast5
man/annotate_tails.Rd
man/explore_basecaller_and_fast5type.Rd
man/extract_read_data.Rd
man/extract_sequence_between_boundaries.Rd
man/figures/._poly_t_without_debug.gif
man/figures/._tailfindr-logo.png
man/figures/cdna_construct.png
man/figures/minkow_live_basecalling.png
man/figures/poly_a_with_debug.gif
man/figures/poly_t_without_debug.gif
man/figures/tailfindr-logo.png
man/find_dna_tail_per_read.Rd
man/find_dna_tailtype.Rd
man/find_rna_polya_crude_start_end.Rd
man/find_rna_polya_precise_start_end.Rd
man/find_rna_polya_tail_per_read.Rd
man/find_sample_index_for_fastq_base.Rd
man/find_tails.Rd
man/get_custom_fp_ep.Rd
man/get_dna_datatype.Rd
man/left_to_right_sliding_window_dna.Rd
man/left_to_right_sliding_window_rna.Rd
man/read_sam.Rd
man/rectify.Rd
man/right_to_left_sliding_window_dna.Rd
man/right_to_left_sliding_window_rna.Rd
man/smoothen_rle_intersections_rna.Rd
man/truncate_spikes.Rd
man/z_normalize.Rd
tailfindr.Rproj
tests/testthat.R
tests/testthat/test-rectify.R
tests/testthat/test-truncate-spikes.R
tests/testthat/test-z-normalize.R
vignettes/.gitignore
vignettes/tailfindr.Rmd
