find_rna_polya_tail_per_read: Find Poly(A) tail in a single RNA read.

In adnaniazi/tailfindr: Poly(A) Tail Length Estimator for Oxford Nanopore RNA and DNA Reads

Find Poly(A) tail in a single RNA read.

Description

Find Poly(A) tail in a single RNA read.

Usage

find_rna_polya_tail_per_read(file_path = NA, read_id_fast5_file = NA,
  multifast5, basecalled_with, basecall_group = "Basecall_1D_000", model,
  save_plots = FALSE, show_plots = FALSE, save_dir = "~",
  plotting_library = "rbokeh", plot_debug = FALSE)

Arguments

file_path	character string. Path of the FAST5 file
read_id_fast5_file	list
multifast5	logical
basecalled_with	character string.
basecall_group	character string.
model	character string
save_plots	logical.
show_plots	logical
save_dir	character string
plotting_library	character string
plot_debug	logical

Value

A list of Fast5 file data

Examples

## Not run: 
find_rna_polya_tail_per_read('path/to/fast5/file')

## End(Not run)

adnaniazi/tailfindr documentation built on March 23, 2024, 7:07 a.m.