API for aertslab/RcisTarget
RcisTarget Identify transcription factor binding motifs enriched on a list of genes or genomic regions
| Global functions | |
|---|---|
| .AUC.geneSet | Source code |
| .RcisTarget_calcAUC | Source code |
| .addSignificantGenes | Source code |
| .addTfs | Source code |
| .auc | Source code |
| .auc.asTable | Source code |
| .calcEnr_Aprox | Source code |
| .calcEnr_iCisTarget | Source code |
| .calcNES | Source code |
| .calcRCC | Source code |
| .calcRCC.oneRanking | Source code |
| .formatTfs | Source code |
| .getIndexCol | Source code |
| .getSignificantGenes | Source code |
| .getTfs | Source code |
| .maxRank.check | Source code |
| .plotRCC | Source code |
| addLogo | Man page Source code |
| addMotifAnnotation | Man page Source code |
| addSignificantGenes | Man page |
| addSignificantGenes,GeneSet-method | Man page |
| addSignificantGenes,GeneSetCollection-method | Man page |
| addSignificantGenes,character-method | Man page |
| addSignificantGenes,list-method | Man page |
| aucScores | Man page |
| aucScores-class | Man page |
| calcAUC | Man page |
| calcAUC,GeneSet-method | Man page |
| calcAUC,GeneSetCollection-method | Man page |
| calcAUC,character-method | Man page |
| calcAUC,list-method | Man page |
| cisTarget | Man page Source code |
| colnames,rankingRcisTarget-method | Man page |
| convertToTargetRegions | Man page Source code |
| dbRegionsLoc | Man page |
| dbRegionsLoc_hg19_v9 | Man page |
| dbRegionsLoc_mm9_v9 | Man page |
| getAUC | Man page |
| getAUC,aucScores-method | Man page |
| getColumnNames | Man page Source code |
| getDbRegionsLoc | Man page Source code |
| getMaxRank | Man page |
| getMaxRank,rankingRcisTarget-method | Man page |
| getMotifAnnotation | Man page Source code |
| getNumColsInDB | Man page |
| getNumColsInDB,rankingRcisTarget-method | Man page |
| getRanking | Man page |
| getRanking,rankingRcisTarget-method | Man page |
| getRowNames | Man page Source code |
| getSignificantGenes | Man page |
| getSignificantGenes,GeneSet-method | Man page |
| getSignificantGenes,GeneSetCollection-method | Man page |
| getSignificantGenes,character-method | Man page |
| getSignificantGenes,factor-method | Man page |
| getSignificantGenes,list-method | Man page |
| importAnnotations | Man page Source code |
| importRankings | Man page Source code |
| motifAnnotations | Man page |
| motifAnnotations_dmel | Man page |
| motifAnnotations_dmel_v8 | Man page |
| motifAnnotations_dmel_v9 | Man page |
| motifAnnotations_hgnc | Man page |
| motifAnnotations_hgnc_v8 | Man page |
| motifAnnotations_hgnc_v9 | Man page |
| motifAnnotations_mgi | Man page |
| motifAnnotations_mgi_v8 | Man page |
| motifAnnotations_mgi_v9 | Man page |
| ncol,rankingRcisTarget-method | Man page |
| nrow,rankingRcisTarget-method | Man page |
| rankingRcisTarget | Man page |
| rankingRcisTarget-class | Man page |
| reRank | Man page Source code |
| rownames,rankingRcisTarget-method | Man page |
| show,aucScores-method | Man page |
| show,rankingRcisTarget-method | Man page |
| showLogo | Man page Source code |
