RcisTarget is an R-package to identify transcription factor (TF) binding motifs over-represented on a gene list.
This Github repository is meant mostly for development. "Use at your own risk" :-). Developers are welcome to contribute.
The databases required to run (R)cisTarget are available at https://resources.aertslab.org/cistarget/ (see the vignette for details). Alternative mirror: https://resources-mirror.aertslab.org/cistarget/.
A tutorial on how to create databases with different settings (e.g. new species) is available at https://github.com/aertslab/create_cisTarget_databases
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