API for aertslab/RcisTarget
RcisTarget Identify transcription factor binding motifs enriched on a list of genes or genomic regions

Global functions
.AUC.geneSet Source code
.RcisTarget_calcAUC Source code
.addSignificantGenes Source code
.addTfs Source code
.auc Source code
.auc.asTable Source code
.calcEnr_Aprox Source code
.calcEnr_iCisTarget Source code
.calcNES Source code
.calcRCC Source code
.calcRCC.oneRanking Source code
.formatTfs Source code
.getIndexCol Source code
.getSignificantGenes Source code
.getTfs Source code
.plotRCC Source code
addLogo Man page Source code
addMotifAnnotation Man page Source code
addSignificantGenes Man page
addSignificantGenes,GeneSet-method Man page
addSignificantGenes,GeneSetCollection-method Man page
addSignificantGenes,character-method Man page
addSignificantGenes,list-method Man page
aucScores Man page
aucScores-class Man page
calcAUC Man page
calcAUC,GeneSet-method Man page
calcAUC,GeneSetCollection-method Man page
calcAUC,character-method Man page
calcAUC,list-method Man page
cisTarget Man page Source code
colnames,rankingRcisTarget-method Man page
convertToTargetRegions Man page Source code
dbRegionsLoc Man page
dbRegionsLoc_hg19 Man page
dbRegionsLoc_mm9 Man page
getAUC Man page
getAUC,aucScores-method Man page
getColumnNames Man page Source code
getDbRegionsLoc Man page Source code
getMaxRank Man page
getMaxRank,rankingRcisTarget-method Man page
getMotifAnnotation Man page Source code
getNumColsInDB Man page
getNumColsInDB,rankingRcisTarget-method Man page
getRanking Man page
getRanking,rankingRcisTarget-method Man page
getRowNames Man page Source code
getSignificantGenes Man page
getSignificantGenes,GeneSet-method Man page
getSignificantGenes,GeneSetCollection-method Man page
getSignificantGenes,character-method Man page
getSignificantGenes,factor-method Man page
getSignificantGenes,list-method Man page
importAnnotations Man page Source code
importRankings Man page Source code
motifAnnotations Man page
motifAnnotations_dmel Man page
motifAnnotations_dmel_v8 Man page
motifAnnotations_hgnc Man page
motifAnnotations_hgnc_v8 Man page
motifAnnotations_mgi Man page
motifAnnotations_mgi_v8 Man page
ncol,rankingRcisTarget-method Man page
nrow,rankingRcisTarget-method Man page
rankingRcisTarget Man page
rankingRcisTarget-class Man page
reRank Man page Source code
rownames,rankingRcisTarget-method Man page
show,aucScores-method Man page
show,rankingRcisTarget-method Man page
aertslab/RcisTarget documentation built on April 21, 2021, 9:46 a.m.