API for aertslab/RcisTarget
RcisTarget: Identify transcription factor binding motifs enriched on a gene list

Global functions
AUC.geneSet Source code
RcisTarget_calcAUC Source code
addLogo Man page Source code
addMotifAnnotation Man page Source code
addSignificantGenes Man page Source code
addSignificantGenes,GeneSet-method Man page
addSignificantGenes,GeneSetCollection-method Man page
addSignificantGenes,character-method Man page
addSignificantGenes,list-method Man page
addTfs Source code
auc Source code
auc.asTable Source code
aucScores Man page
aucScores-class Man page
calcAUC Man page
calcAUC,GeneSet-method Man page
calcAUC,GeneSetCollection-method Man page
calcAUC,character-method Man page
calcAUC,list-method Man page
calcEnr_Aprox Source code
calcEnr_iCisTarget Source code
calcNES Source code
calcRCC Source code
calcRCC.oneRanking Source code
cisTarget Man page Source code
fakeDatabase Man page Source code
getAUC Man page Man page
getAUC,aucScores-method Man page
getMaxRank Man page
getMaxRank,rankingRcisTarget-method Man page
getRanking Man page
getRanking, Man page
getRanking,rankingRcisTarget-method Man page
getSignificantGenes Man page Source code
getSignificantGenes,GeneSet-method Man page
getSignificantGenes,GeneSetCollection-method Man page
getSignificantGenes,character-method Man page
getSignificantGenes,factor-method Man page
getSignificantGenes,list-method Man page
ncol, Man page
nrow, Man page
plotRCC Source code
rankingRcisTarget Man page
rankingRcisTarget, Man page
rankingRcisTarget-class Man page
rankingRcisTarget-class, Man page
show, Man page
show,aucScores-method Man page
show,rankingRcisTarget-method Man page
subset Man page
tfInAnnot Source code
aertslab/RcisTarget documentation built on Oct. 30, 2017, 8:44 p.m.