Files in aertslab/RcisTarget
RcisTarget Identify transcription factor binding motifs enriched on a list of genes or genomic regions

DESCRIPTION
NAMESPACE
R/00_importAnnotations.R R/00_importRankings.R R/01_calcAUC.R R/02_addMotifAnnotation.R R/03_addSignificantGenes.R R/10_cisTarget.R R/aux_addLogo.R R/aux_convertToTargetRegions.R R/aux_getDbRegionsLoc.R R/aux_reRank.R R/class_aucScores.R R/class_rankingRcisTarget.R R/data_dbReggionsLoc.R R/data_motifAnnotations.R R/priv_calcErn.R R/priv_plotRCC.R README.md
data/dbRegionsLoc_hg19.RData
data/motifAnnotations_dmel.RData
data/motifAnnotations_dmel_v8.RData
data/motifAnnotations_hgnc.RData
data/motifAnnotations_hgnc_v8.RData
data/motifAnnotations_mgi.RData
data/motifAnnotations_mgi_v8.RData
inst/CITATION
inst/NEWS
inst/examples/example_addLogo.R inst/examples/example_addMotifAnnotation.R inst/examples/example_addSignificantGenes.R inst/examples/example_aucScores_class.R inst/examples/example_cisTarget.R inst/examples/example_reRank.R inst/examples/example_workflow.R
inst/examples/hypoxiaGeneSet.txt
inst/examples/motifEnrichmentTable.RData
inst/examples/motifEnrichmentTable_wGenes.RData
inst/examples/randomGeneSet.txt
man/RcisTarget.Rd man/addLogo.Rd man/addMotifAnnotation.Rd man/addSignificantGenes.Rd man/aucScores-class.Rd man/calcAUC.Rd man/convertToTargetRegions.Rd man/dbRegionsLoc.Rd man/getDbRegionsLoc.Rd man/getMotifAnnotation.Rd man/importAnnotations.Rd man/importRankings.Rd man/motifAnnotations.Rd man/rankingRcisTarget-class.Rd man/reRank.Rd tests/testthat.R tests/testthat/test_RcisTarget.R vignettes/RcisTarget_MainTutorial.Rmd vignettes/Tutorial_AnalysisOfGenomicRegions.Rmd vignettes/Tutorial_AnalysisWithBackground.Rmd
vignettes/corrected.css
aertslab/RcisTarget documentation built on April 21, 2021, 9:46 a.m.