Man pages for aertslab/RcisTarget
RcisTarget Identify transcription factor binding motifs enriched on a list of genes or genomic regions
| addLogo | Add motif logo to RcisTarget results table |
| addMotifAnnotation | Add motif annotation |
| addSignificantGenes | Add significant genes |
| aucScores-class | Class to store the AUC scores for RcisTarget. |
| calcAUC | Calculate AUC |
| convertToTargetRegions | convertToTargetRegions |
| dbRegionsLoc | Genomic location for the database regions |
| getDbRegionsLoc | Gets the region location for the given database IDs. |
| getMotifAnnotation | Get motif annotation |
| importAnnotations | Imports the annotations of motifs to transcription factors |
| importRankings | Import the motif databases for RcisTarget. |
| motifAnnotations | Annotations of Motifs to TFs |
| rankingRcisTarget-class | Class to store the motif databases for RcisTarget. |
| RcisTarget | cisTarget |
| reRank | Re-rank RcisTarget ranking |
| showLogo | Show RcisTarget as HTML |
