EulerrPlot: plot Prapotional venn diagram for upregulated and...
In afitz-gmu/DGE-Analysis: Bioinformatics plots for various Visualization
Description
Usage
Arguments
Value
Examples
Description
plot Prapotional venn diagram for upregulated and downregulated genes
Usage
1
EulerrPlot(DE, FoldChange = 0, cutoff = 0.05, type.sig = "p")
Arguments
DE
list of Differentially Expressed Genes from Various methods.
FoldChange
is cuoff to mark genes as Differentially expressed
cutoff
is either pvalue of FDR cutoff for filtering
type.sig
vector c('p', 'FDR') default 'p'
Value
NULL
Examples
1
2
3
4
data("DEG")
DE.list<-list("edger" =dge_edger, "edgerql" = dge_edgerql,
"deseq2" = dge_deseq2, "voom" = dge_voom )
EulerrPlot(DE=DE.list , FoldChange=1.5 , cutoff =0.01 , type.sig ="FDR")
afitz-gmu/DGE-Analysis documentation built on April 3, 2021, 2:39 a.m.
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Description Usage Arguments Value Examples
Description
plot Prapotional venn diagram for upregulated and downregulated genes
Usage
1 | EulerrPlot(DE, FoldChange = 0, cutoff = 0.05, type.sig = "p")
|
Arguments
DE |
list of Differentially Expressed Genes from Various methods. |
FoldChange |
is cuoff to mark genes as Differentially expressed |
cutoff |
is either pvalue of FDR cutoff for filtering |
type.sig |
vector |
Value
NULL
Examples
1 2 3 4 | data("DEG")
DE.list<-list("edger" =dge_edger, "edgerql" = dge_edgerql,
"deseq2" = dge_deseq2, "voom" = dge_voom )
EulerrPlot(DE=DE.list , FoldChange=1.5 , cutoff =0.01 , type.sig ="FDR")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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