UpSetPlot: plot UpSetPlot diagram for upregulated and downregulated...

In afitz-gmu/DGE-Analysis: Bioinformatics plots for various Visualization

Description

plot UpSetPlot diagram for upregulated and downregulated genes

Usage

UpSetPlot(DE, FoldChange = 0, cutoff = 0.05, type.sig = NULL)

Arguments

DE	list of Differentially Expressed Genes from Various methods.
FoldChange	is cuoff to mark genes as Differentially expressed
cutoff	is either pvalue of FDR cutoff for filtering
type.sig	vector c('p', 'FDR') default 'p'

Value

NULL-

Examples

data("DEG")
DE.list<-list("edger" =dge_edger, "edgerql" = dge_edgerql,
"deseq2" = dge_deseq2, "voom" = dge_voom )
UpSetPlot(DE=DE.list , FoldChange=0 , cutoff =0.01 , type.sig = "FDR")

afitz-gmu/DGE-Analysis documentation built on April 3, 2021, 2:39 a.m.