MethodEdgeRLRT: EdgeR LRT method
In afitz-gmu/DGE-Analysis: Bioinformatics plots for various Visualization
Description
Usage
Arguments
Value
Examples
View source: R/MethodEdgeRLRT.R
Description
EdgeR LRT method
Usage
1
MethodEdgeRLRT(count.table, design.matrix)
Arguments
count.table
count table
design.matrix
design matrix
Value
data.frame of differential gene expression quantification by EdgeR
Examples
1
2
3
4
5
6
7
8
data("count.table")
ss <- data.frame("trt" = colnames(count.table))
rownames(ss) <- ss$trt
ss$trt <- as.integer(grepl("T",ss[,1]))
design <- model.matrix(~ss$trt)
EdgeR.LRT <- MethodEdgeRLRT(count.table = count.table, design.matrix = design)
afitz-gmu/DGE-Analysis documentation built on April 3, 2021, 2:39 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
View source: R/MethodEdgeRLRT.R
Description
EdgeR LRT method
Usage
1 | MethodEdgeRLRT(count.table, design.matrix)
|
Arguments
count.table |
count table |
design.matrix |
design matrix |
Value
data.frame of differential gene expression quantification by EdgeR
Examples
1 2 3 4 5 6 7 8 | data("count.table")
ss <- data.frame("trt" = colnames(count.table))
rownames(ss) <- ss$trt
ss$trt <- as.integer(grepl("T",ss[,1]))
design <- model.matrix(~ss$trt)
EdgeR.LRT <- MethodEdgeRLRT(count.table = count.table, design.matrix = design)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.