TabulateStats: plot Prapotional venn diagram for upregulated and...

In afitz-gmu/DGE-Analysis: Bioinformatics plots for various Visualization

Description

plot Prapotional venn diagram for upregulated and downregulated genes

Usage

TabulateStats(
  DE,
  FoldChange = 0,
  cutoff = 0.05,
  DE.Only = TRUE,
  type.sig = "p"
)

Arguments

DE	list of Differentially Expressed Genes from Various methods.
FoldChange	is cuoff to mark genes as Differentially expressed
cutoff	is either pvalue of FDR cutoff for filtering
DE.Only	Logical, show unchanged genes or not default TRUE
type.sig	vector c('p', 'FDR') default 'p'

Value

data frame of Deferentially expressed genes counts in various methods

Examples

data("DEG")
DE.list<-list("edger" =dge_edger, "edgerql" = dge_edgerql,
"deseq2" = dge_deseq2, "voom" = dge_voom )
TabulateStats(DE=DE.list , FoldChange=1.5 , cutoff =0.01 , type.sig ="FDR")

afitz-gmu/DGE-Analysis documentation built on April 3, 2021, 2:39 a.m.