Files in aiminy/ModifiedclusterProfiler
statistical analysis and visualization of functional profiles for genes and gene clusters
.Rbuildignore
.gitignore
.travis.yml
CONTRIBUTING.md
DESCRIPTION
Makefile
NAMESPACE
NEWS
R/00-AllClasses.R
R/AllGenerics.R
R/DOSE.R
R/GFFparser.R
R/GMT.R
R/accessor.R
R/bitr.R
R/buildGOmap.R
R/clusterProfiler-package.R
R/compareCluster.R
R/dotplot.R
R/enrichDAVID.R
R/enrichGO.R
R/enrichKEGG.R
R/enrichMKEGG.R
R/enricher.R
R/go-utilities.R
R/gofilter.R
R/groupGO.R
R/gseAnalyzer.R
R/helper_for_new_p.R
R/kegg-utilities.R
R/mytest.R
R/plotGOgraph.R
R/simplify.R
R/utilities.R
R/zzz.R
README.Rmd
README.md
appveyor.yml
data/gcSample.rda
data/kegg_species.rda
docs/404.html
docs/ChIPseeker/index.html
docs/DOSE/index.html
docs/GOSemSim/index.html
docs/ReactomePA/index.html
docs/base.html
docs/clusterProfiler/index.html
docs/content.html
docs/css/base.css
docs/css/bootstrap-custom.min.css
docs/css/highlight.css
docs/documentation/index.html
docs/emojifont/index.html
docs/featuredArticles/index.html
docs/ggtree/index.html
docs/img/favicon.ico
docs/img/grid.png
docs/index.html
docs/js/base.js
docs/js/bootstrap-3.0.3.min.js
docs/js/highlight.pack.js
docs/js/jquery-1.10.2.min.js
docs/meshes/index.html
docs/mkdocs/js/lunr-0.5.7.min.js
docs/mkdocs/js/mustache.min.js
docs/mkdocs/js/require.js
docs/mkdocs/js/search-results-template.mustache
docs/mkdocs/js/search.js
docs/mkdocs/js/text.js
docs/mkdocs/search_index.json
docs/nav-sub.html
docs/nav.html
docs/sitemap.xml
docs/toc.html
inst/CITATION
inst/extdata/D39/EG2ALLGO.rda
inst/extdata/D39/EG2GO.rda
inst/extdata/D39/GO2ALLEG.rda
inst/extdata/D39/GO2EG.rda
inst/extdata/D39/geneTable.rda
inst/extdata/D39/proteinTable.rda
inst/extdata/M5005/EG2ALLGO.rda
inst/extdata/M5005/EG2GO.rda
inst/extdata/M5005/GO2ALLEG.rda
inst/extdata/M5005/GO2EG.rda
inst/extdata/M5005/geneTable.rda
inst/extdata/NC_007297.gff
inst/extdata/c5.cc.v5.0.entrez.gmt
inst/extdata/clusterProfiler.Rnw
inst/extdata/clusterProfiler_for_unsupported_organisms.pdf
inst/extdata/for_unsupported.html
inst/extdata/for_unsupported.md
inst/extdata/for_unsupported.rmd
inst/extdata/rmd2pdf.R
man/DataSet.Rd
man/GSEA.Rd
man/Gff2GeneTable.Rd
man/bitr.Rd
man/bitr_kegg.Rd
man/browseKEGG.Rd
man/buildGOmap.Rd
man/clusterProfiler-package.Rd
man/compareCluster.Rd
man/compareClusterResult-class.Rd
man/dotplot-methods.Rd
man/download_KEGG.Rd
man/dropGO.Rd
man/enrichDAVID.Rd
man/enrichGO.Rd
man/enrichKEGG.Rd
man/enrichMKEGG.Rd
man/enricher.Rd
man/fortify.Rd
man/getGOLevel.Rd
man/go2ont.Rd
man/go2term.Rd
man/gofilter.Rd
man/groupGO.Rd
man/groupGOResult-class.Rd
man/gseGO.Rd
man/gseKEGG.Rd
man/gseMKEGG.Rd
man/idType.Rd
man/merge_result.Rd
man/plot-methods.Rd
man/plotGOgraph.Rd
man/plotting.clusterProfile.Rd
man/read.gmt.Rd
man/search_kegg_organism.Rd
man/simplify-methods.Rd
man/viewKEGG.Rd
mkdocs/docs/ChIPseeker.md
mkdocs/docs/DOSE.md
mkdocs/docs/GOSemSim.md
mkdocs/docs/ReactomePA.md
mkdocs/docs/clusterProfiler.md
mkdocs/docs/documentation.md
mkdocs/docs/emojifont.md
mkdocs/docs/featuredArticles.md
mkdocs/docs/ggtree.md
mkdocs/docs/index.md
mkdocs/docs/meshes.md
mkdocs/mkdocs.yml
mkdocs/mysoftware/ChIPseeker.md
mkdocs/mysoftware/DOSE.md
mkdocs/mysoftware/GOSemSim.md
mkdocs/mysoftware/ReactomePA.md
mkdocs/mysoftware/clusterProfiler.md
mkdocs/mysoftware/emojifont.md
mkdocs/mysoftware/ggtree.md
mkdocs/mysoftware/meshes.md
mkdocs/src/documentation.md
mkdocs/src/featuredArticles.md
mkdocs/src/index.md
tests/testthat.R
tests/testthat/test-bitr.R
vignettes/clusterProfiler.Rmd
vignettes/clusterProfiler.bib
vignettes/figures/browseKEGG.png
vignettes/figures/cnetplot.png
vignettes/figures/enrichMap.png
vignettes/figures/hsa04110_pathview.png
vignettes/nature.csl
