GeneWisePvsExonWiseP: Compare gene based p value with exon based p value
In aiminy/PathwaySJ: A R package for GO term enrichment analysis with the flexible bias factor adjustment
Usage
1
GeneWisePvsExonWiseP(subfeature_based_input_file, gene_based_input_file)
Arguments
input_data_set
data set for all genes
gene_wise_p_c
genewise p value column
feature_wise_p_c
feature(exon or SJ) p value column
Examples
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load("/media/H_driver/2015/Nimer_Cheng/Data_set_two_methods.RData")
GeneWisePvsExonWiseP(data.table.gene.based.all.jscs4,7,9)
Re<-GeneWisePvsExonWiseP("/media/H_driver/2015/Nimer_Cheng/GeneWise_jscs3_all_with_anno_2_24_2016.csv",
"/media/H_driver/2015/Nimer_Cheng/DE_cheng_output_sample1_DE.csv")
aiminy/PathwaySJ documentation built on May 10, 2019, 7:38 a.m.
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Usage
1 | GeneWisePvsExonWiseP(subfeature_based_input_file, gene_based_input_file)
|
Arguments
input_data_set |
data set for all genes |
gene_wise_p_c |
genewise p value column |
feature_wise_p_c |
feature(exon or SJ) p value column |
Examples
1 2 3 4 5 6 | load("/media/H_driver/2015/Nimer_Cheng/Data_set_two_methods.RData")
GeneWisePvsExonWiseP(data.table.gene.based.all.jscs4,7,9)
Re<-GeneWisePvsExonWiseP("/media/H_driver/2015/Nimer_Cheng/GeneWise_jscs3_all_with_anno_2_24_2016.csv",
"/media/H_driver/2015/Nimer_Cheng/DE_cheng_output_sample1_DE.csv")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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