GotermAnalysis2GetAllGOTerms_AdjustedByNumOfJunctionWithinOneGene: This function is to subset data set based on feature

In aiminy/PathwaySJ: A R package for GO term enrichment analysis with the flexible bias factor adjustment

Description

This function is to subset data set based on feature

Usage

  GotermAnalysis2GetAllGOTerms_AdjustedByNumOfJunctionWithinOneGene(re.gene.based,
  ad = "GL", sub_feature = NULL, threshold, gene_model)

Arguments

threshold

Examples

Re.Go.adjusted.by.number.junction.2<-GotermAnalysis2GetAllGOTerms_AdjustedByNumOfJunctionWithinOneGene(
re.PJ.gene.based,ad="J","J",0.05,"Splice_junction_based")

data.pwf2.SJs<-plotPWF2(Re.Go.adjusted.by.number.junction.2[[2]],binsize=30,xlab = "Number of SJs(<binsize> gene bins)")

Re.Go.adjusted.by.exon.SJ<-GotermAnalysis2GetAllGOTerms_AdjustedByNumOfJunctionWithinOneGene(
re.PJ.gene.based,ad="exon_SJ",sub_feature=NULL,0.05,file_prefix="Exon_Splice_junction_based.xls",gene_model=gene.model)

aiminy/PathwaySJ documentation built on May 10, 2019, 7:38 a.m.