Gmt2GeneCat: Gmt2GeneCat
In aiminy/PathwaySJ: A R package for GO term enrichment analysis with the flexible bias factor adjustment
Description
Usage
Arguments
Examples
Description
Read a gmt file, and return a list with the name of element being a gene id based on gene_anno_file, and each element
being the pathways that this gene corresponds to
Usage
1
Gmt2GeneCat(gmt_input_file, gene_anno_file)
Arguments
based_by
Examples
1
2
3
4
5
gene.2.cat.cp.mouse<-Gmt2GeneCat("/media/H_driver/Annotation/MsigDB/c2.cp.Mouse.v5.1.symbols.gmt",
"/media/H_driver/Annotation/mm10/genes_table_02052016.csv")
gene.2.cat.tft.mouse<-Gmt2GeneCat("/media/H_driver/Annotation/MsigDB/c3.tft.Mouse.v5.1.symbols.gmt",
"/media/H_driver/Annotation/mm10/genes_table_02052016.csv")
aiminy/PathwaySJ documentation built on May 10, 2019, 7:38 a.m.
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Description Usage Arguments Examples
Description
Read a gmt file, and return a list with the name of element being a gene id based on gene_anno_file, and each element being the pathways that this gene corresponds to
Usage
1 | Gmt2GeneCat(gmt_input_file, gene_anno_file)
|
Arguments
based_by |
Examples
1 2 3 4 5 | gene.2.cat.cp.mouse<-Gmt2GeneCat("/media/H_driver/Annotation/MsigDB/c2.cp.Mouse.v5.1.symbols.gmt",
"/media/H_driver/Annotation/mm10/genes_table_02052016.csv")
gene.2.cat.tft.mouse<-Gmt2GeneCat("/media/H_driver/Annotation/MsigDB/c3.tft.Mouse.v5.1.symbols.gmt",
"/media/H_driver/Annotation/mm10/genes_table_02052016.csv")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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