Get_Over_under_represented_pvalue: calculate the p-value for GO terms
In aiminy/PathwaySJ: A R package for GO term enrichment analysis with the flexible bias factor adjustment
Description
Usage
Arguments
Examples
Description
calculate the p-value for GO terms
Usage
1
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Get_Over_under_represented_pvalue(num_de_incat, num_incat, num_genes, num_de,
weight)
Arguments
weight
Examples
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28 186 1852 125 1.03043
use the gene pooled from all GO terms
Get_Over_under_represented_pvalue(28,186,1852,125,1.03043)
use the genes that have matched GO terms
Get_Over_under_represented_pvalue(28,186,1840,125,1.026767)
aiminy/PathwaySJ documentation built on May 10, 2019, 7:38 a.m.
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Description Usage Arguments Examples
Description
calculate the p-value for GO terms
Usage
1 2 | Get_Over_under_represented_pvalue(num_de_incat, num_incat, num_genes, num_de,
weight)
|
Arguments
weight |
Examples
1 2 3 4 5 6 7 8 | 28 186 1852 125 1.03043
use the gene pooled from all GO terms
Get_Over_under_represented_pvalue(28,186,1852,125,1.03043)
use the genes that have matched GO terms
Get_Over_under_represented_pvalue(28,186,1840,125,1.026767)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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