JS.perGeneQValue: JS.perGeneQValue

In aiminy/PathwaySJ: A R package for GO term enrichment analysis with the flexible bias factor adjustment

Description

JS.perGeneQValue

Usage

JS.perGeneQValue(pvals, wTest, geneID, method = JS.perGeneQValueExact)

Arguments

method

Examples

data.perGeneQ.use.large.FC.featutre<-JS.perGeneQValue(Re.PJ.selected$pvalue,
Re.PJ.selected$testable,Re.PJ.selected$geneID,method = JS.perGeneQValueExact)

length(unique(as.character(Re.PJ.selected$geneID)))

head(Re.PJ.selected)


data.perGeneQ.use.large.FC.featutre.2<-list_to_df(data.perGeneQ.use.large.FC.featutre)
colnames(data.perGeneQ.use.large.FC.featutre.2)<-c("geneID","geneWisePadj_FC")

Re.PJ.selected.2<-merge(Re.PJ.selected,data.perGeneQ.use.large.FC.featutre.2,by="geneID")


head(Re.PJ.selected.2)

re.PJ.gene.based.selected<-merge(pData(re.PJ.gene.based),data.perGeneQ.use.large.FC.featutre.2,by="geneID")

aiminy/PathwaySJ documentation built on May 10, 2019, 7:38 a.m.