API for aiminy/PathwaySJ
A R package for GO term enrichment analysis with the flexible bias factor adjustment
| Global functions | |
|---|---|
| Combine3Re | Man page |
| CombineCpTftGoGeneID | Man page |
| CompareDEfromGeneWithDEfromFeatures | Man page |
| CompareGOResults | Man page |
| Draw4Cat | Man page |
| Draw4GO | Man page |
| DrawFeature | Man page |
| ExtractGeneIDFromGo | Man page |
| FDR_genewise | Man page |
| GSA.read.gmt.2 | Man page |
| GeneBasedAnalysis | Man page |
| GeneWisePvsExonWiseP | Man page |
| GenerateGeneAnno | Man page |
| GetCCBetweenMostSigPadjustSJ | Man page |
| GetDesign | Man page |
| GetMgiSymbolDescription | Man page |
| GetMgiSymbolUsingLocalDataBase | Man page |
| GetPwfUseReformatedData | Man page |
| GetResults4GeneLevel | Man page |
| GetResultsFromJunctionSeq | Man page |
| Get_Over_under_represented_pvalue | Man page |
| Gmt2GeneCat | Man page |
| GotermAnalysis2GetAllGOTerms_AdjustedByNumOfJunctionWithinOneGen | Man page |
| GotermAnalysisUseFeatureDefineDE | Man page |
| GotermAnalysisUseReformatedData | Man page |
| JS.perGeneQValue | Man page |
| JS.perGeneQValueExact | Man page |
| JS.perGeneQValueExact.test | Man page |
| LabelGeneBasedFeature | Man page |
| NBsim | Man page |
| OuputGO | Man page |
| OutputCatBasedPwf | Man page |
| OutputFigure | Man page |
| OutputGOBasedDEfromFeatures | Man page |
| OutputGOBasedDEfromFeatures2 | Man page |
| OutputGOBasedDEfromFeatures3 | Man page |
| OutputGeneWiseTable | Man page |
| PermutattionOfRawData | Man page |
| ProcessCuffLinkResults | Man page |
| ProcessOutputFilesFrom_rMATS | Man page |
| ReformatData | Man page |
| ReformatDataUseTable | Man page |
| SelectFeature | Man page |
| Select_DE_gene_basd_on_Feature | Man page |
| SimulationSJ2DE | Man page |
| UseLogistic2CKBias | Man page |
| UseLogistic2_adDE | Man page |
| UseOtherDataSet | Man page |
| callQoRT | Man page |
| gene2cat | Man page |
| gene2cat2 | Man page |
| getDataset | Man page |
| getgo | Man page |
| getgo3 | Man page |
| goseq2 | Man page |
| list_to_df | Man page |
| makeGeneWiseTable | Man page |
| plotPWF2 | Man page |
| readJunctionSeqCounts | Man page |
| reversemapping | Man page |
