Select_DE_gene_basd_on_Feature: Select_DE_gene_based_on_Feature
In aiminy/PathwaySJ: A R package for GO term enrichment analysis with the flexible bias factor adjustment
Description
Usage
Arguments
Examples
Description
Select_DE_gene_based_on_Feature
Usage
1
2
Select_DE_gene_basd_on_Feature(Re.PJ, re.PJ.gene.based, re.rMAT, splicing_type,
cutoff_FC, cutoff_P_value, gene_model, venn_output)
Arguments
splicing_type:
there are 5 splicing types from rMAT, need to choose one
Examples
1
2
3
4
5
6
Re.PJ.selected.feature.FC.p<-Select_DE_gene_basd_on_Feature(Re.PJ,re.PJ.gene.based,re.rMAT,0.58,0.05,outputfile_DGE_FC_P_geneWise)
dim(Re.PJ.selected.feature.FC.p)
head(Re.PJ.selected.feature.FC.p)
length(which(Re.PJ.selected.feature.FC.p$DE_or_not==1))
Re.PJ.selected.feature.FC.p.check<-Select_DE_gene_basd_on_Feature(Re.PJ,re.PJ.gene.based,re.rMAT,"SE",2,0.05,outputfile_DGE_FC_P_geneWise)
aiminy/PathwaySJ documentation built on May 10, 2019, 7:38 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Examples
Description
Select_DE_gene_based_on_Feature
Usage
1 2 | Select_DE_gene_basd_on_Feature(Re.PJ, re.PJ.gene.based, re.rMAT, splicing_type,
cutoff_FC, cutoff_P_value, gene_model, venn_output)
|
Arguments
splicing_type: |
there are 5 splicing types from rMAT, need to choose one |
Examples
1 2 3 4 5 6 | Re.PJ.selected.feature.FC.p<-Select_DE_gene_basd_on_Feature(Re.PJ,re.PJ.gene.based,re.rMAT,0.58,0.05,outputfile_DGE_FC_P_geneWise)
dim(Re.PJ.selected.feature.FC.p)
head(Re.PJ.selected.feature.FC.p)
length(which(Re.PJ.selected.feature.FC.p$DE_or_not==1))
Re.PJ.selected.feature.FC.p.check<-Select_DE_gene_basd_on_Feature(Re.PJ,re.PJ.gene.based,re.rMAT,"SE",2,0.05,outputfile_DGE_FC_P_geneWise)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.