#' createExperimentContainer- Creates a new experiment container by adding an exiting container to an experiment.
#'
#' \code{createExperimentContainer} Creates a new experiment container by adding an existing container to an experiment.
#' @param coreApi coreApi object with valid jsessionid
#' @param experimentType experiment type to get as character string
#' @param experimentBarcode experiment barcode of an unpublished experiment
#' @param containerBarcode barcode of container to add to experiment
#' @param body values for sample attributes as a list of key-values pairs (not user in this json version)
#' @param fullMetadata get full metadata, default is FALSE
#' @param useVerbose Use verbose communication for debugging
#' @export
#' @return RETURN returns a list $entity contains entity information, $response contains the entire http response
#' @examples
#' \dontrun{
#' api <- coreAPI("PATH TO JSON FILE")
#' login <- authBasic(api)
#' item <- createExperimentContainer(
#' login$coreApi, "Experiment_Type",
#' "ExperimentBarCode", "Containerbarcode"
#' )
#' logOut(login$coreApi)
#' }
#' @author Craig Parman info@ngsanalytics.com
#' @author Natasha Mora natasha.mora@thermofisher.com
#' @description \code{createExperimentContainer}Creates a new experiment container by adding an existing container
#' to an experiment.
createExperimentContainer <-
function(coreApi,
experimentType,
experimentBarcode,
containerBarcode,
body = NULL,
fullMetadata = FALSE,
useVerbose = FALSE) {
experimentType <- odataCleanName(experimentType)
if (fullMetadata) {
headers <- c("Content-Type" = "application/json", "Accept" = "application/json;odata.metadata=full")
} else {
headers <- c("Content-Type" = "application/json", "Accept" = "application/json")
}
# no lint start
case(
grepl("[0-2]+\\.[0-9]+\\.[0-9]+", coreApi$semVer) ~ {
body <- list(
"CONTAINER_EXPERIMENT@odata.bind" = paste0("/", experimentType, "('", experimentBarcode, "')"),
"CONTAINER@odata.bind" = paste0("/CONTAINER('", containerBarcode, "')")
)
},
grepl("[3-9]+\\.[0-9]+\\.[0-9]+", coreApi$semVer) ~ {
body <- list(
"EXPERIMENT@odata.bind" = paste0("/", experimentType, "('", experimentBarcode, "')"),
"CONTAINER@odata.bind" = paste0("/CONTAINER('", containerBarcode, "')")
)
}
)
# no lint end
resource <- paste0(experimentType, "_CONTAINER")
response <-
apiPOST(
coreApi,
resource = resource,
body = jsonlite::toJSON(body, auto_unbox = TRUE),
encode = "raw",
headers = headers,
special = NULL,
useVerbose = useVerbose
)
list(entity = httr::content(response), response = response)
}
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