#' createSampleLot - Creates a lot of a sample.
#'
#' \code{createSampleLot} Creates a sample lot of a sample. Assumes the sample lot entity is in the form samplename_lot
#' @param coreApi coreApi object with valid jsessionid
#' @param sampleType sample type to create the lot of
#' @param sampleBarcode parent sample barcode
#' @param body attributes as list of key-values pairs (optional)
#' @param fullMetadata get full metadata, default is FALSE
#' @param useVerbose Use verbose communication for debugging
#' @export
#' @return RETURN returns a list $entity contains entity information, $response contains the entire http response
#' @examples
#' \dontrun{
#' api <- coreAPI("PATH TO JSON FILE")
#' login <- authBasic(api)
#' lot <- createSampleLot(login$coreApi, sampleType, sampleBarcode, )
#' logOut(login$coreApi)
#' }
#' @author Craig Parman info@ngsanalytics.com
#' @author Natasha Mora natasha.mora@thermofisher.com
#' @author Adam Wheeler adam.wheeler@thermofisher.com
#' @description \code{createSampleLot} Creates a new sample lot using the parent sample barcode
createSampleLot <-
function(coreApi,
sampleType,
sampleBarcode,
body = NULL,
fullMetadata = TRUE,
useVerbose = FALSE) {
# clean the name for ODATA
sampleType <- odataCleanName(sampleType)
lotName <- paste0(sampleType, "_LOT")
case(
grepl("[0-2]+\\.[0-9]+\\.[0-9]+", coreApi$semVer) ~ {
dataBind <- "IMPL_LOT_SAMPLE@odata.bind"
},
grepl("[3-9]+\\.[0-9]+\\.[0-9]+", coreApi$semVer) ~ {
dataBind <- "SAMPLE@odata.bind"
}
)
switch(EXPR = coreApi$semVer,
"2.7.1" = NULL,
"3.0.3" = NULL,
print(warning("This PFS version has not been tested. Please contact support if any errors arise."))
)
lotRef <- list(dataBind = paste0("/", sampleType, "('", sampleBarcode, "')"))
names(lotRef) <- dataBind
fullBody <- jsonlite::toJSON(c(body, lotRef), auto_unbox = TRUE)
if (fullMetadata) {
headers <- c("Content-Type" = "application/json", "Accept" = "application/json;odata.metadata=full")
} else {
headers <- c("Content-Type" = "application/json", "Accept" = "application/json")
}
response <-
apiPOST(
coreApi,
resource = lotName,
body = fullBody,
encode = "json",
headers = headers,
special = NULL,
useVerbose = useVerbose
)
list(entity = httr::content(response), response = response)
}
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.