catmaid_interactive_join: Interactively choose to join neurons in CATMAID, visualising...

In alexanderbates/catnat: Analyse neuronal morphology and connectivity (extends catmaid and nat)

Interactively choose to join neurons in CATMAID, visualising with rgl in R

Description

Interactively choose to join neurons in CATMAID via rgl in R. Use with caution in live tracing environments.

Usage

catmaid_interactive_join(
  possible.merges,
  downstream.neurons = NULL,
  brain = NULL,
  pid = 1,
  conn = conn,
  ...
)

Arguments

possible.merges	a data frame of possible mergers between tree nodes for neurons in a CATMAID database, as returned via catmaid_find_likely_merge
downstream.neurons	neurons (typically smaller, new tracings) to be joined into other (typically larger) neurons, which will be pulled from CATMAID. If NULL, the downstream neurons are also pulled from CATMAID.
brain	the brain to plot while visualising potential mergers using rgl. Defaults to NULL, no brain plotted.
pid	project id. Defaults to 1
conn	CATMAID connection object, see ?catmaid::catmaid_login for details
...	methods passed to catmaid::catmaid_fetch

alexanderbates/catnat documentation built on Sept. 5, 2023, 4:51 a.m.