fafb_neuron_details: Find out what is already known about a neuron's connectivity...

In alexanderbates/catnat: Analyse neuronal morphology and connectivity (extends catmaid and nat)

Find out what is already known about a neuron's connectivity profile and connected FAFB segments

Description

Set the local path to the location where you have .zip files of FAFB segmented skeletons

Usage

fafb_neuron_details(
  skids,
  direction = c("incoming", "outgoing"),
  connector_ids = connector_ids,
  mesh3d = NULL,
  pid = 1,
  conn = NULL,
  ...
)

Arguments

skids	neuron skeleton ids
direction	whether to fetch putative incoming or outgoing partners
connector_ids	Optional numeric ids of CATMAID connector nodes that will restrict connections for analysis
mesh3d	mesh3d to which to restrict connector locations
pid	project id. Defaults to 1
conn	CATMAID connection object, see ?catmaid::catmaid_login for details
...	methods passed to catmaid_get_connector_table

alexanderbates/catnat documentation built on Sept. 5, 2023, 4:51 a.m.