extract_cable: Extract axonic/dendritic points/cable from a...

In alexanderbates/catnat: Analyse neuronal morphology and connectivity (extends catmaid and nat)

Extract axonic/dendritic points/cable from a neuron/neuronlist

Description

Extract axonic/dendritic/mixed/primary dendrite points/endpoints/cable from a neuron/neuronlist object

Usage

axonic_points(x, ...)

dendritic_points(x, ...)

mixed_points(x, ...)

primary_dendrite_points(x, ...)

## S3 method for class 'neuron'
axonic_points(x)

## S3 method for class 'neuron'
dendritic_points(x)

## S3 method for class 'neuron'
mixed_points(x)

## S3 method for class 'neuron'
primary_dendrite_points(x)

## S3 method for class 'neuronlist'
dendritic_points(x, ...)

## S3 method for class 'neuronlist'
axonic_points(x, ...)

## S3 method for class 'neuronlist'
mixed_points(x, ...)

## S3 method for class 'neuronlist'
primary_dendrite_points(x, ...)

axonal_endings(x)

dendritic_endings(x)

axonic_endings(x)

primary_dendrite_endings(x)

axonic_cable(x, ...)

dendritic_cable(x, ...)

arbour_cable(x, ...)

unsure_cable(x, ...)

primary_dendrite_cable(x, ...)

## S3 method for class 'neuron'
axonic_cable(x, mixed = FALSE, ...)

## S3 method for class 'catmaidneuron'
axonic_cable(x, mixed = FALSE, ...)

## S3 method for class 'neuron'
dendritic_cable(x, mixed = FALSE, ...)

## S3 method for class 'catmaidneuron'
dendritic_cable(x, mixed = FALSE, ...)

## S3 method for class 'neuron'
arbour_cable(x, mixed = FALSE, ...)

## S3 method for class 'catmaidneuron'
arbour_cable(x, mixed = FALSE, ...)

## S3 method for class 'neuron'
unsure_cable(x, mixed = FALSE, ...)

## S3 method for class 'catmaidneuron'
unsure_cable(x, mixed = FALSE, ...)

## S3 method for class 'neuron'
primary_dendrite_cable(x, ...)

## S3 method for class 'catmaidneuron'
primary_dendrite_cable(x, ...)

## S3 method for class 'neuronlist'
axonic_cable(x, mixed = FALSE, ...)

## S3 method for class 'neuronlist'
dendritic_cable(x, mixed = FALSE, ...)

## S3 method for class 'neuronlist'
arbour_cable(x, mixed = FALSE, ...)

## S3 method for class 'neuronlist'
unsure_cable(x, ...)

## S3 method for class 'neuronlist'
primary_dendrite_cable(x, ...)

Arguments

x	a neuron/neuronlist object that has its axons/dendrites labelled in swc format in its neuron$d dataframes
...	additional arguments passed to methods
mixed	whether or not to include points assigned as uncertain or mixed polarity cable

Value

a matrix of 3D points

alexanderbates/catnat documentation built on Sept. 5, 2023, 4:51 a.m.