catmaid_interactive_name_transfer: Interactively transfer names and annotations between neurons...

In alexanderbates/catnat: Analyse neuronal morphology and connectivity (extends catmaid and nat)

Interactively transfer names and annotations between neurons in two different CATMAID instances

Description

Interactively transfer names and annotations between neurons in two different CATMAID instances

Usage

catmaid_interactive_name_transfer(
  x = "name:ASB CHECK",
  transfer.annotations = TRUE,
  additional.annotations = "ASB CHECK",
  downsample = 100,
  fafbseg = FALSE,
  duplication.range.nm = 1,
  pid = 1,
  conn = NULL,
  pid2 = 1,
  conn2 = fafb_seg_conn(),
  ...
)

Arguments

x	a neuron object, or the skeleton ID of a neuron in v14 space
transfer.annotations	whether or not to also transfer annotations
additional.annotations	an additional annotation to add to the neurons specified by x
downsample	if downsample > 1, a sample of number.of.points/downsample is taken from the neuron, and only these points are used to assess duplication. Speeds things up
fafbseg	whether or not to use fafbseg::read_brainmaps_meshes on the TODO tag locations and restrict possible duplication to skeletons within the search range and within the cognate auto-segmented volume
duplication.range.nm	determines the size of the bounding box around each node in neuron to search for a duplicated. Defaults to 1 nm
pid	project id for conn. Defaults to 1
conn	CATMAID connection object, see ?catmaid::catmaid_login for details
pid2	project id for conn2. Defaults to 1
conn2	CATMAID connection object, see ?catmaid::catmaid_login for details
...	methods passed to catmaid::catmaid_fetch

alexanderbates/catnat documentation built on Sept. 5, 2023, 4:51 a.m.