catmaid_skeletons_in_bbx: Search for CATMAID skeletons within a volume

In alexanderbates/catnat: Analyse neuronal morphology and connectivity (extends catmaid and nat)

Search for CATMAID skeletons within a volume

Description

Programmatically search for skeleton IDs pertaining to neurons within a search volume defined by a bounding box.

Usage

catmaid_skeletons_in_bbx(bbx, min_nodes = 2, pid = 1, conn = NULL, ...)

Arguments

bbx	the bounding box (a matrix of 2 rows and 3 columns) describing a search volume
min_nodes	the minimum number of nodes a neuron in the search area must have (includes nodes outside search area)
pid	project id. Defaults to 1
conn	CATMAID connection object, see ?catmaid::catmaid_login for details
...	methods passed to catmaid::catmaid_fetch

alexanderbates/catnat documentation built on Sept. 5, 2023, 4:51 a.m.