Files in alexanderbates/catnat
Analyse neuronal morphology and connectivity (extends catmaid and nat)

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/Amira.R R/CTEDIT.R R/alphashape.R R/auxillary.R R/catmaid.R R/catnat-package.R R/clusterbysynapse.R R/clustersynapses.R R/connectivity.R R/connectivitysimilarity.R R/create_skeleton.R R/dendritic.R R/flowcentrality.R R/flycircuit.R R/getsynapses.R R/googlesheets.R R/inside_neuropils.R R/kde.R R/microtubules.R R/modelmaking.R R/neurites.R R/neuronlist.R R/open_l1.R R/prune.R R/sampling.R R/scanning.R R/selections.R R/shiftneurons.R R/shollanalysis.R R/somas.R R/sorting.R R/tracerstats.R R/zzz.R README.md
catnat.Rproj
inst/extdata/InitialAffine/finalaffine_ChiangFemaleTowardsFCWB.rds
inst/extdata/InitialAffine/finalaffine_ChiangMaleTowardsFCWB.rds
inst/extdata/InitialAffine/initialiseCMTKreg_ChiangFemaleTowardsFCWB.rds
inst/extdata/InitialAffine/initialiseCMTKreg_ChiangMaleTowardsFCWB.rds
inst/extdata/affine/FCWB_typicalbrainfemale_01_9dof.list/cmd.sh
inst/extdata/affine/FCWB_typicalbrainfemale_01_9dof.list/registration
inst/extdata/affine/FCWB_typicalbrainfemale_01_9dof.list/settings
inst/extdata/affine/FCWB_typicalbrainfemale_01_9dof.list/statistics
inst/extdata/affine/FCWB_typicalbrainfemale_01_9dof.list/studylist
inst/extdata/warp/FCWB_typicalbrainfemale_01_warp_m0g80c8e1e-1x26r4.list/cmd.sh
inst/extdata/warp/FCWB_typicalbrainfemale_01_warp_m0g80c8e1e-1x26r4.list/registration.gz
inst/extdata/warp/FCWB_typicalbrainfemale_01_warp_m0g80c8e1e-1x26r4.list/settings
inst/extdata/warp/FCWB_typicalbrainfemale_01_warp_m0g80c8e1e-1x26r4.list/statistics
inst/extdata/warp/FCWB_typicalbrainfemale_01_warp_m0g80c8e1e-1x26r4.list/studylist
inst/extdata/warp/FCWB_typicalbrainmale_01_warp_m0g80c8e1e-1x26r4.list/cmd.sh
inst/extdata/warp/FCWB_typicalbrainmale_01_warp_m0g80c8e1e-1x26r4.list/registration
inst/extdata/warp/FCWB_typicalbrainmale_01_warp_m0g80c8e1e-1x26r4.list/registration.gz
inst/extdata/warp/FCWB_typicalbrainmale_01_warp_m0g80c8e1e-1x26r4.list/settings
inst/extdata/warp/FCWB_typicalbrainmale_01_warp_m0g80c8e1e-1x26r4.list/statistics
inst/extdata/warp/FCWB_typicalbrainmale_01_warp_m0g80c8e1e-1x26r4.list/studylist
man/WriteVTKalphashape.Rd man/arbour.clusters.Rd man/as.mesh3d.kde.Rd man/ashape2mesh3d.Rd man/assign.connector.info.Rd man/assign_cable.polarity.Rd man/assign_lh_neuron.Rd man/assign_strahler.Rd man/assignside.Rd man/average.tracts.Rd man/catmaid_annotate_partners.Rd man/catmaid_set_meta_annotations.Rd man/catnat-package.Rd man/cluster_synapses_within_skeleton.Rd man/clusterbysynapses.Rd man/combine.alphashape.Rd man/connectivity_matrix.Rd man/connectivity_similarity.Rd man/contribution.to.skeletons.Rd man/correctsoma.Rd man/create_skeleton_from_nrrd.Rd man/create_tracing_samplesheet.Rd man/distance.from.first.branchpoint.Rd man/downstream.deletion.test.Rd man/extract_cable.Rd man/flow.centrality.Rd man/get.hxsurf.Rd man/get.skeleton.from.flycircuit.Rd man/get.synapses.Rd man/get_connected_skeletons.Rd man/inside_neuropils.Rd man/label_neuron.class.Rd man/make.anatomical.model.Rd man/make.mirror.transform.Rd man/manually_assign_axon_dendrite.Rd man/microtubules.Rd man/napplyTransform.Rd man/nblast_bothways.Rd man/neurites.Rd man/neurons.inside.Rd man/open_l1.Rd man/overlap.connectivity.matrix.Rd man/pointsinsidemesh.Rd man/primary.neurite.Rd man/prune.catmaidneuron.Rd man/prune_by_tag.Rd man/prune_distal.Rd man/prune_in_volume.Rd man/prune_online.Rd man/prune_strahler.catmaidneuron.Rd man/prune_vertices.catmaidneuron.Rd man/resample.catmaidneuron.Rd man/rescue.dps.Rd man/scan4matching.Rd man/seebroken3d.Rd man/seesplit3d.Rd man/select_neurons.Rd man/select_points.Rd man/shift.neurons.Rd man/sholl_analysis.Rd man/soma.Rd man/subtree.Rd man/synapsecolours.neuron.Rd man/tracer.plot.Rd man/transform3dalphashape.Rd man/update.neuronlist.Rd man/write.spin.swc.Rd tests/testthat.R tests/testthat/test-assign_lh_neuron.R tests/testthat/test-googlesheets.R tests/testthat/test-primary.neurite.R
tests/testthat/testdata/pnt1.rds
alexanderbates/catnat documentation built on Oct. 11, 2018, 8:36 p.m.