open_l1: Jump from R into the L1 larval EM data in CATMAID

In alexanderbates/catnat: Analyse neuronal morphology and connectivity (extends catmaid and nat)

Jump from R into the L1 larval EM data in CATMAID

Description

Takes you to a region in the Em data chosen by an rgl selection window by the user

Usage

open_l1(
  x,
  s = rgl::select3d(),
  zoom = 1,
  open = interactive(),
  scalefac = 1,
  ...
)

Arguments

x	a 3D shape, neuronlist or neuron object that has been plotted in 3D whose coordinates can be accessed with nat::xyzmatrix()
s	selection method. Defaults to rgl selection window.
zoom	zoom level to be applied in CATMAID
open	whether to open CATMAID window in browser
scalefac	the scale factor that has been applied to the neurons/shapes plotted in R
...	additional arguments passed to methods.

Details

CATMAID access required. Data collected and described in cited publication.

Value

Appropriate L1 CATMAID url

References

Ohyama T, Schneider-Mizell CM, Fetter RD, Aleman JV, Franconville R, Rivera-Alba M, Mensh BD, Branson KM, Simpson JH, Truman JW, et al. (2015) A multilevel multimodal circuit enhances action selection in Drosophila. Nature.

alexanderbates/catnat documentation built on Sept. 5, 2023, 4:51 a.m.