View source: R/flowcentrality.R
seesplit3d | R Documentation |
Plot neurons split up by flow centrality
seesplit3d(
someneuronlist,
col = c("blue", "orange", "purple", "green", "grey", "pink"),
splitnode = FALSE,
WithConnectors = TRUE,
WithNodes = F,
soma = 100,
highflow = F,
lwd = 1,
radius = 1,
...
)
splitscan(
someneuronlist,
col = c("blue", "orange", "purple", "green", "grey", "pink"),
WithConnectors = T,
WithNodes = F,
soma = 100,
highflow = F,
Verbose = T,
Wait = T,
sleep = 0.1,
extrafun = NULL,
selected_file = NULL,
selected_col = "black",
yaml = TRUE,
...
)
someneuronlist |
a neuronlist or neuron object that has been modified by flow.centrality |
col |
colours of sections. Defaults to orange or axons, green for primary dendrite, blue for dendrites and pink for nodes with no flow. |
splitnode |
if TRUE, a magenta sphere is placed at the location of the axon-dendrite split. Possible a putative action potential initiation site? |
WithConnectors |
whether ot plot the anatomical location of pre (red) and post (cyan) synapses. |
WithNodes |
whether to plot branch points |
soma |
whether to plot a soma, and what the radius should be |
highflow |
whether to plot the nodes of highest (with in one standard deviation less than maximum) flow centrality (pink points) |
lwd |
Line width (default 1) |
radius |
For connectors and axon-dendrite split node (default 1) |
... |
additional arguments passed to methods. |
Verbose |
logical indicating that info about each selected neuron should be printed (default TRUE) |
Wait |
logical indicating that there should be a pause between each displayed neuron |
sleep |
time to pause between each displayed neuron when Wait=TRUE |
extrafun |
an optional function called when each neuron is plotted, with two arguments: the current neuron name and the current selected neurons |
selected_file |
an optional path to a yaml file that already contains a selection |
selected_col |
the color in which selected neurons (such as those specified in selected_file) should be plotted |
yaml |
a logical indicating that selections should be saved to disk in (human-readable) yaml rather than (machine-readable) rda format |
Plots coloured neuron(s)
flow.centrality
get.synapses
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