microtubules: Functions to assign and visualise microtubule rich and twig...

In alexanderbates/catnat: Analyse neuronal morphology and connectivity (extends catmaid and nat)

Functions to assign and visualise microtubule rich and twig portions of a neuron

Description

Manually assign the dendrite and axon to neurons / a neuron

Usage

mark.microtubules(x, ...)

## S3 method for class 'neuron'
mark.microtubules(x, ...)

## S3 method for class 'neuronlist'
mark.microtubules(x, ...)

prune_microtubules(x, ...)

## S3 method for class 'neuron'
prune_microtubules(x, microtubules = TRUE, ...)

## S3 method for class 'neuronlist'
prune_microtubules(x, microtubules = TRUE, ...)

visualise.microtubules(x, soma = TRUE, WithConnectors = FALSE, ...)

microtubules.errors(skid)

Arguments

x	a neuron/neuronlist object
...	Additional arguments passed to nlapply
microtubules	whether to return the microtubule containing arbour (TRUE) or twigs (FALSE)
soma	for visualise.microtubules whether to show the soma
WithConnectors	for visualise.microtubules whether to show connectors
skid	skeleton ID of CATMAID neuron for checking whether there are presynapses marked as being on a microtubule-lacking twig

Value

The neuron/neuronlist object with axon/dendrite info assigned in SWC format to neuron$d

alexanderbates/catnat documentation built on Sept. 5, 2023, 4:51 a.m.