prune_in_volume: Prune neuron within neuropil volume

In alexanderbates/catnat: Analyse neuronal morphology and connectivity (extends catmaid and nat)

Prune neuron within neuropil volume

Description

Prune neuron within neuropil volume

Usage

prune_in_volume(
  x,
  brain = nat.flybrains::FCWBNP.surf,
  neuropil = "LH_R",
  invert = TRUE,
  ...
)

## S3 method for class 'neuron'
prune_in_volume(
  x,
  brain = nat.flybrains::FCWBNP.surf,
  neuropil = "LH_R",
  invert = TRUE,
  ...
)

## S3 method for class 'neuronlist'
prune_in_volume(
  x,
  brain = nat.flybrains::FCWBNP.surf,
  neuropil = "LH_R",
  invert = TRUE,
  ...
)

Arguments

x	a neuron object
brain	The hxsurf object containing the neuropil of interest, e.g. FCWBNP.surf
neuropil	Character vector specifying the neuropil
invert	Logical when TRUE indicating that points outside the
...	Additional arguments for methods (eventually passed to prune.default) surface should be pruned.

Details

Prune neuron inside subvolume of a segmented brain object.

alexanderbates/catnat documentation built on Sept. 5, 2023, 4:51 a.m.