tracer.plot: Get data and plots describing tracer activity statistics

In alexanderbates/catnat: Analyse neuronal morphology and connectivity (extends catmaid and nat)

Get data and plots describing tracer activity statistics

Description

Some functions that quickly visualise tracer effort, or retrieve data to do with tracer effort.

Usage

tracer.plot(
  names = c("Alex Bates", "Ruairi Roberts", "Greg Jefferis", "Clement Hallou",
    "Philipp Ranft", "Philipp Schlegel", "Fiona Love", "Amelia Edmondson-Stait"),
  calc.date = "2016-04-01",
  from.date = "2016-04-01",
  to.date = Sys.Date(),
  cumulative = T,
  ...
)

tracer.treenodes.plot(
  skids = NULL,
  names = c("Alex Bates", "Ruairi Roberts", "Greg Jefferis", "Clement Hallou",
    "Philipp Ranft", "Philipp Schlegel", "Fiona Love", "Amelia Edmondson-Stait"),
  from.date = "2016-04-01",
  to.date = Sys.Date(),
  ...
)

tracer.neuron.stats(skids, value = c("nodes", "pre", "post"), ...)

Arguments

names	Full names of tracers
calc.date	The date from which to retrieve data for the graphs
from.date	The date from which to plot the graphs
to.date	The date to which to plot the graphs
cumulative	Whether to generate a cumulative plot. Defaults to true.
...	additional arguments passed to methods.
skids	The skids of the neurons to consider
value	Whether to look at tree node, pre synapse connector or post synaptic node data.

Value

tracer.plot() returns a plot for cable length traced and connectors placed by named tracers. tracer.treenodes.plot() visualises data on node generation.

alexanderbates/catnat documentation built on Sept. 5, 2023, 4:51 a.m.